Welcome
This document has been created following the generic assessment guidance.
Description
Basic details about the assessment. Update the ‘response’ values as required.
| question | response |
|---|---|
| name_short | MPFF Compliance |
| name_long | Marine Pen Fish farm Compliance |
| parameter | Marine Benthic Inverts |
| status | prototype |
| type | compliance |
Input
A list of questions required to run the assessment.
| question | response |
|---|---|
| Site Name | South Cava |
| Permit | CAR/L/1072725 |
| Responsible person | Chris Webb |
| Operator (if different from above) | Cooke Aquaculture Scotland |
| Maximum licensed biomass (tonnes) | 2500 |
| Date site stocked | 44421 |
| Peak biomass during growing cycle (tonnes) | 2344 |
| Date peak biomass first reached | 44602 |
| Date when biomass reduced to 75% of peak biomass | 44658 |
| Date of survey (start date) | 44672 |
| Date of survey (finish date) | 44673 |
| Biomass on site at time of survey (tonnes) | 1485 |
| If fallow, date fish last on site | NA |
| Site centre Easting | 333270 |
| Site centre Northing | 9333270 |
| Number of pens | 16 |
| Number of pens stocked at time of survey | 14 |
| Pen dimension | 120m |
| Pen configuraton | 8 x 2 |
| Surveyed by | Cooke Aquaculture Scotland |
| Comments (any relevant information) | Organic matter results for mps stations are given in “TOC” boxes - NOTE these are %LOI and not TOC figures |
| Fauna | Biotikos |
| Carbon | Peatfield Scientific |
| Particle Size | Peatfield Scientific |
| Residues | NA |
| Report By | Inga Williamson |
| Report Date | 44775 |
| Authorised By | Inga Williamson |
| Authorised date | 44775 |
| Description (unprotected cell - can be edited) | SW0 |
| Easting | 333031 |
| Northing | 998594 |
| Depth (m) | 28.3 |
| Date sampled (dd/mm/yy) | 44672 |
| Time sampled (hh:mm) | 0.4513888888888889 |
| Parmeters sampled: Fauna (Yes/No) | Yes |
| Carbon (Yes/No) | No |
| Particle Size (Yes/No) | Yes |
| Emamectin Benzoate Residues (Yes/No) | No |
| Parmeters sampled: Fauna (Yes/No) | NA |
| Distance from cages (m) | 506 |
| Direction from cages (deg) | SW - 222 |
| Description | SW0 |
| Depth | 28.3 |
| Date sampled | 44672 |
| % Grab filled | 70 |
| Grab size | 4.4999999999999998E-2 |
| Colour | Dark brown |
| Consistency/Texture | Fine sand, silt |
| Surface smell (Yes/No) | No |
| Fungus (Yes/No) | No |
| % < 0.063mm | 3.2727170993733208 |
| % 0.125-0.063mm | 16.226359668755592 |
| % 0.25-0.125mm | 51.504168531781552 |
| % 0.5 - 0.25mm | 20.387057967770811 |
| % 1 - 0.5mm | 3.5312220232766336 |
| % 2 - 1mm | 2.2896150402864812 |
| % 4 - 2mm | 2.3059814234556848 |
| % 8 - 4mm | 0.48287824529991036 |
| % > 8mm | 0 |
| Degree of sorting | Moderately Sorted |
| Degree of skewness | Coarse Skewed |
| Degree of kurtosis | Very Leptokurtic |
| Folk Triangle | Slightly Gravelly Sand |
| Number of taxa (S) | 5 |
| Abundance (N) | 1357 |
| Magalef’s Richness (d) | 0.55455184291975967 |
| Pielou’s Evenness (J) | 0.25807116764664573 |
| S-Wiener Diversity H’log 2 | 0.59922269463913325 |
| Number of Enrichment Polychaete Species | 2 |
| Abundance of Enrichment Polychaetes (m2) | 1555.5555555555557 |
| ITI | 0.24723655121592003 |
| IQI | 0.34918566141370255 |
| Replicate 1 (see note 1 below) | NA |
| Replicate 2 (see note 1 below) | NA |
| Replicate 3 (see note 1 below) | NA |
| Mean (see note 1 below) | NA |
| LOD | NA |
| Number of replicates | 2 |
| MCS Code | A |
| comment | NA |
| Taxon abundance | 0 |
| Transect 2 Species Abundance Matrix | A |
| Transect 3 Species Abundance Matrix | A |
| Transect 4 Species Abundance Matrix | A |
| Transect 5 Species Abundance Matrix | MCS Code (optional) |
| Transect 6 Species Abundance Matrix | MCS Code (optional) |
| Additional Stations Species Abundance Matrix | A |
Assessment
If applicable, write a function to assess your input data and return an outcome. For example, a metric, statistic, prediction etc.
Outcome
The outcome of your assessment.
| question | response |
|---|---|
| stationNumber | Compliant: Min. number of stations have been taken (8) |
| twoConsecutiveStations | Compliant: 2 consecutive stations at Good are returned |
| breachDistanceBestFit | 97 |
| breachLongitude | -3.16422049321529 |
| breachLatitude | 58.8689019638222 |
| area_95_confidence | 147643.06981096 |
| package_version | 0.2.1.9000 |
| package_date | 2025-01-24 |
| IQI | 0.349185661413703 |
| Easting | 333031 |
| Northing | 998594 |
| MCFF_Transect | South Cava - 1 |
| Longitude | -3.16298523772361 |
| Latitude | 58.8694927035989 |
| Bearing | -132.717722103408 |
| Distance | 0 |
| Number of stations per transect | 8 |
| WFD status | Poor |
| ellipse | object |
| polygon | object |
| spotfire_polygon | object |
| breachPositionEnsemble | NA |
| map | NA |
| model_info | NA |
| ellipse_warnings | NA |
| geoDf | NA |
| Median distance to Good (m) | NA |
Check
Run checks on the assessment.
#> Test passed 🎊
#> Test passed 🎊| check | value |
|---|---|
| standard_names | TRUE |
| standard_required | TRUE |
| standard_required_values | TRUE |
Update
Update the catalogue of assessments to make them available.
#> ✔ Setting active project to "/home/runner/work/hera/hera".
#> ✔ Saving "catalogue" to "data/catalogue.rda".
#> ☐ Document your data (see <https://r-pkgs.org/data.html>).After updating the catalogue, rebuild the package, click on Build > Install and Restart menu or ‘Install and Restart’ button in the Build pane.